Skip to content

@griffithlab The Griffith Lab

All

    Repositories list

    87 repositories

    • VAtools

      Public
      A set of tools to annotate VCF files with expression and readcount data
      Python
      •
      MIT License
      •14•32•0•0•Updated Oct 13, 2026Oct 13, 2026

    • civic-v2

      Public
      CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
      cancervariantscancer-genomics
      cancervariantscancer-genomicsbiocurationnci-itcrvariant-curation
      TypeScript
      •
      MIT License
      •8•31•83•51•Updated Oct 13, 2026Oct 13, 2026

    • pmbio.org

      Public
      Website for the precision medicine workshop
      SCSS
      •
      MIT License
      •22•49•13•3•Updated Oct 12, 2026Oct 12, 2026

    • pVACtools

      Public
      cancersequencingvariants
      cancersequencingvariantsimmunotherapyimmunogenomicsfusionsneoantigensantigens
      Python
      •
      BSD 3-Clause Clear License
      •81•190•94•13•Updated Oct 5, 2026Oct 5, 2026

    • civicpy

      Public
      A python interface for the CIViC db application
      civic
      civic
      Python
      •
      MIT License
      •8•13•32•3•Updated Oct 5, 2026Oct 5, 2026

    • civic-editor-tools

      Public
      automations to facilitate editor review and issue correction in civicdb
      Python
      •
      MIT License
      •0•0•4•0•Updated Oct 2, 2026Oct 2, 2026

    • civic-pubtator

      Public
      Version of tmvar working on ARM with detailed instructions and examples
      Shell
      •
      MIT License
      •1•1•1•1•Updated Oct 2, 2026Oct 2, 2026

    • pVACtools_Intro_Course

      Public
      Getting started with pVACtools - pVACseq, pVACbind and pVACview
      CSS
      •
      Creative Commons Attribution 4.0 International
      •2•1•0•0•Updated Oct 1, 2026Oct 1, 2026

    • docker-pvactools

      Public
      Python
      •
      Other
      •8•3•0•0•Updated Sep 29, 2026Sep 29, 2026

    • ImmuScope

      Public
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • civic-mcp-server

      Public
      JavaScript
      •
      Other
      •2•1•0•0•Updated Sep 11, 2026Sep 11, 2026

    • civic-docs

      Public
      Source code for the civicdb.org docs
      civic
      civic
      Creative Commons Zero v1.0 Universal
      •9•5•22•5•Updated Sep 9, 2026Sep 9, 2026

    • griffithlab.org

      Public
      Griffith lab research website
      JavaScript
      •
      MIT License
      •30•17•1•1•Updated Aug 20, 2026Aug 20, 2026

    • neoag_vaccine_scripts

      Public
      Python
      •
      MIT License
      •2•0•9•1•Updated Aug 14, 2026Aug 14, 2026

    • rnabio.org

      Public
      website for the rnaseq course
      SCSS
      •
      MIT License
      •44•127•20•1•Updated Aug 9, 2026Aug 9, 2026

    • ImmunoNX_protocol

      Public
      Tutorial for running immuno.wdl on Google Cloud
      MIT License
      •2•5•0•1•Updated Aug 6, 2026Aug 6, 2026

    • unconference-site

      Public
      Website program for CIViC hackathon/curation unconference
      Astro
      •0•0•0•1•Updated Aug 6, 2026Aug 6, 2026

    • pvactools_percentiles_data

      Public
      pvactools algorithm prediction scores for reference peptides to enable percentiles calculations
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2026Jul 14, 2026

    • docker-vatools

      Public
      Dockerfile
      •1•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • bio-text-annotator

      Public
      Python
      •0•0•0•0•Updated Jun 27, 2026Jun 27, 2026

    • NEAT

      Public
      This repository contains a new feature for the pVACtools suite that enables machine learning–based prediction of neoantigen candidate selection following pVACse…
      Python
      •
      MIT License
      •0•1•0•0•Updated Jun 26, 2026Jun 26, 2026

    • variant-curation-unconference

      Public
      Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities
      civiccurationunconference
      civiccurationunconferencecivic-meetings
      3•10•28•0•Updated Jun 2, 2026Jun 2, 2026

    • genviz.org

      Public
      Genomic data interpretation and visualization Workshop
      SCSS
      •
      MIT License
      •4•22•14•3•Updated May 8, 2026May 8, 2026

    • TL-MHC

      Public
      R
      •1•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • GenVisR

      Public
      Genome data visualizations
      R
      •
      Creative Commons Zero v1.0 Universal
      •65•227•61•4•Updated Jan 10, 2026Jan 10, 2026

    • bigmhc

      Public
      BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
      Jupyter Notebook
      •
      Other
      •13•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • peptide-sequence-synthesis

      Public
      Python
      •0•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • fusion_review

      Public
      Python
      •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

    • docker-hla-hd

      Public
      Dockerfile, dictionary and scripts needed to run hla-hd
      C
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • CIVIC_SVI_Course

      Public
      A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines
      CSS
      •
      Creative Commons Attribution 4.0 International
      •2•0•0•1•Updated Jun 6, 2025Jun 6, 2025
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.