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Genealogical Nearest Neighbours: Should Input Be Restricted to Shared SNPs?

Status: Open.

#1187 In tskit-dev/tsinfer;

· itsmestewart opened on Jun 18, 2026

Reimplement support for sites with multiple mutations

Status: Open.

#1186 In tskit-dev/tsinfer;

· hyanwong opened on Jun 10, 2026

pipeline.match exposes reference_ts / config [match].reference_ts but always builds make_root_ts instead

Status: Open.

#1185 In tskit-dev/tsinfer;

· hyanwong opened on Jun 8, 2026

Update to use vcztools 0.2.0

Status: Open.

#1184 In tskit-dev/tsinfer;

· jeromekelleher opened on Jun 8, 2026

Moving breakpoints by mapping non-inference mutations

Status: Open.

#1183 In tskit-dev/tsinfer;

· hyanwong opened on May 13, 2026

Add "align_edges" operation

Status: Open.

#1179 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 31, 2026

Implement distributed commands

Status: Open.

#1175 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 30, 2026

Add tests for coordinate overflow

Status: Open.

#1170 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 27, 2026

Implement path_compression

Status: Open.

#1169 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 27, 2026

Validate multi-ancestor approaches at scale

Status: Open.

#1167 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 27, 2026

Run "unified genealogy" inferences and test multi-source inference

Status: Open.

#1166 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 27, 2026

Update documentation for 1.0 changes

Status: Open.

#1164 In tskit-dev/tsinfer;

· jeromekelleher opened on Mar 27, 2026