A KMER-based genome-wIde Assocation testing approach on polyploids

DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.

QTL mapping with binmap data

Flexible, scalable, QTL analyses using generalized linear models implemented in JAX

R package for random-effect multiple QTL mapping in autopolyploids

Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R

MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading

GUI for binQTL

Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.

QTL Bayesian Interval Mapping

github repository for R package mpQTL

MetaPipe: A High-Performance Computing pipeline for QTL mapping of large metabolomic datasets

Pipeline for polymap and QTL Mapping

Analysis code for AIL B6xBFMI

Scripts of Final Master Project

See https://biometris.github.io/statgenMPP for a full description

Data repository for the paper of the same name.

Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end

Project for my module Big Data Biology.

In-silico methods for finemapping of genetic regions in inbred mice