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  1. TFBS_footprinting3 TFBS_footprinting3 Public

    Pipeline: Identification of cis-regulatory elements by matrix scoring and analysis of supporting empirical biological data.

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    Interactive visualization of population genetics data for ~10,000 modern and ancient individuals.

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    Pipeline: Identification of cis-regulatory elements by matrix scoring and conservation.

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    RAG pipeline for scientific literature using PubMed and LLMs

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    A copy-number-aware per-super-enhancer, per-lineage specificity score — a CaCTS for super-enhancers. 42,943 SE loci across 282 cancer cell lines, scored with a calibrated label-permutation FDR.

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