Issues

• not enough null data to estimate null correlation

  stephenslab/mashr#139 · Filter by author 15959601368 opened on Aug 15, 2026
  1

• Guidance on cov_pca and EM usage + error running cov_flash

  stephenslab/mashr#138 · Filter by author lucia-ramirez opened on Nov 7, 2025
  8

• Regarding the use of mashr to evaluate the similarity of effect sizes under different conditions

  stephenslab/mashr#136 · Filter by author yrjia1015 opened on Dec 6, 2024
  1

• citation for EM approach to estimate V

  stephenslab/mashr#135 · Filter by author stephens999 opened on Nov 7, 2024
  1

• Division by zero in mash_set_data with df matrix after applying p2z

  stephenslab/mashr#133 · Filter by author dorolin opened on Nov 6, 2024

• better documentation for missing data and EE and EZ model

  stephenslab/mashr#132 · Filter by author stephens999 opened on Oct 29, 2024
  2

• Is it valid to test whether two posterior means are different with t-test?

  stephenslab/mashr#131 · Filter by author MaximalLife opened on Oct 8, 2024
  3

• need better documentation for computing posterior for linear combinations of effects

  stephenslab/mashr#130 · Filter by author stephens999 opened on Oct 1, 2024
  4

• Application of mashr to smaller number of tests

  stephenslab/mashr#129 · Filter by author vinettey opened on Sep 11, 2024
  1

• eqtl analysis problem - decrease running time and memory burden - running mashr by chromosome

  stephenslab/mashr#127 · Filter by author jke20 opened on Aug 5, 2024
  6

• application to very sparse conditions, need to intersect?

  stephenslab/mashr#126 · Filter by author BradleyH017 opened on Jul 29, 2024
  7

• Error in extreme_deconvolution_rcpp when using the strong tests to set up data-driven covariances.

  stephenslab/mashr#125 · Filter by author Gongmian784 opened on Jul 26, 2024
  3

• Peforming mash with eQTL results from different variants & gene sets across conditions

  stephenslab/mashr#122 · Filter by author kimbioinfo opened on May 15, 2024
  1

• Potential issue of computing posterior summaries for a single test

  stephenslab/mashr#118 · Filter by author ez-xyz opened on Jul 31, 2023
  4

• MatrixEQTLSumStats.Portable.Z.rds?

  stephenslab/mashr#117 · Filter by author carmenmacr11 opened on Jul 9, 2023
  3

• Question about the methodology for selecting strong datasets

  stephenslab/mashr#116 · Filter by author harrsha4 opened on Jun 28, 2023
  1

• Issue in cov_flash() function

  stephenslab/mashr#115 · Filter by author fmorgante opened on Jun 15, 2023
  5

• new mashr cov_flash() use flashier package

  stephenslab/mashr#114 · Filter by author arkyl opened on Apr 17, 2023
  7

• Document allowing missing data in mash_set_data

  enhancement
  stephenslab/mashr#113 · Filter by author pcarbo opened on Apr 6, 2023

• mashr for multiple gwas

  stephenslab/mashr#112 · Filter by author arkyl opened on Mar 9, 2023
  5

• can mashr be used in interaction terms

  stephenslab/mashr#109 · Filter by author arkyl opened on Oct 14, 2022
  2

• How to use mashr to estimate the change in some quantity measured in multiple conditions compared with different conditions

  stephenslab/mashr#104 · Filter by author WangRong423 opened on Feb 15, 2022

• Covariates used for condition-by-condition analyses

  stephenslab/mashr#103 · Filter by author ghost opened on Jan 24, 2022
  1

• multiple cohorts from the same tissue

  stephenslab/mashr#102 · Filter by author arkyl opened on Oct 19, 2021
  5

• Multiple related phentypes & QTL summary stats

  stephenslab/mashr#100 · Filter by author anamariaUIC opened on Jul 19, 2021
  3