Fix step 9 reference in upload_freesurfer.sh completion message

[Copilot]

The upload_freesurfer.sh script (Step 8) incorrectly referenced Step 7 for running full fMRIPrep workflows. Step 7 doesn't exist—it's Step 9.

Changes

• Updated completion message to reference Step 9 and ./09-run.sbatch instead of non-existent Step 7 and ./07-run.sbatch

Before

echo "1. Run fMRIPrep step 7 (full workflows) to use edited surfaces"
echo "   ./07-run.sbatch"

After

echo "1. Run fMRIPrep step 9 (full workflows) to use edited surfaces"
echo "   ./09-run.sbatch"

This aligns with the pipeline structure where Steps 7-8 are FreeSurfer editing toolbox utilities, and Step 9 (09-run-fmriprep/) executes the full fMRIPrep workflows.

Original prompt

instructions after running the step 8 upload freesurfer command has the wrong step number for the fmriprep full func workflows step: 9.

Successfully uploaded: 1 subjects

Original Freesurfer outputs backed up on server as:
  {subject}.backup.20251222_134018

Next steps:
1. Run fMRIPrep step 7 (full workflows) to use edited surfaces
   ./07-run.sbatch

please set to merge this into PR #74 (release candidate v0.3.1)

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[shawntz]

fizzy