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xenium: use cell_id name for shapes index#399

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LucaMarconato merged 1 commit into
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fix/xenium-cell-id-index-name-for-shapes
May 15, 2026
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xenium: use cell_id name for shapes index#399
LucaMarconato merged 1 commit into
mainfrom
fix/xenium-cell-id-index-name-for-shapes

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Closes #398

@LucaMarconato LucaMarconato enabled auto-merge (squash) May 15, 2026 21:13
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codecov-commenter commented May 15, 2026

Codecov Report

❌ Patch coverage is 50.00000% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 63.38%. Comparing base (6960c4c) to head (419b37c).

Files with missing lines Patch % Lines
src/spatialdata_io/readers/xenium.py 50.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #399      +/-   ##
==========================================
- Coverage   63.39%   63.38%   -0.01%     
==========================================
  Files          26       26              
  Lines        3215     3217       +2     
==========================================
+ Hits         2038     2039       +1     
- Misses       1177     1178       +1     
Files with missing lines Coverage Δ
src/spatialdata_io/readers/xenium.py 74.81% <50.00%> (-0.13%) ⬇️
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@LucaMarconato LucaMarconato disabled auto-merge May 15, 2026 21:19
@LucaMarconato LucaMarconato merged commit a63ca08 into main May 15, 2026
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@LucaMarconato LucaMarconato deleted the fix/xenium-cell-id-index-name-for-shapes branch May 15, 2026 21:19
Darlokt pushed a commit to Darlokt/spatialdata-io that referenced this pull request May 16, 2026
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Preserve .index.name == 'cell_id' for xenium() shapes

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