Issues

• GenomeScope 2.0 CLI and web interface give different genome size estimates from the same k-mer histogram

  schatzlab/genomescope#172 · Filter by author terry105040819 opened on Sep 11, 2026
  2

• Strange Model Fit with HiFi Data

  schatzlab/genomescope#171 · Filter by author Tsvanorden opened on Sep 1, 2026
  1

• Help with genome size and ploidy

  schatzlab/genomescope#170 · Filter by author SanSanMX opened on Jul 16, 2026

• Parmeter to spcify fastk output

  schatzlab/genomescope#169 · Filter by author arslan9732 opened on May 7, 2026
  2

• Genome size is underestimated based on C-value

  schatzlab/genomescope#166 · Filter by author joeycurti3 opened on Jan 14, 2026
  1

• Strange results with HiFi reads from Revio platform

  schatzlab/genomescope#165 · Filter by author jacopoM28 opened on Jan 9, 2026
  2

• Question about the polyploid genome size

  schatzlab/genomescope#164 · Filter by author ysaberc-lab opened on Oct 28, 2025
  1

• Error in if (arguments$json_report) { : argument is of length zero

  schatzlab/genomescope#163 · Filter by author xiekunwhy opened on Oct 25, 2025
  2

• Question about analyzing low-depth tetraploid resequencing data for auto vs. allo

  schatzlab/genomescope#162 · Filter by author yokkkkl opened on Oct 16, 2025
  2

• Selecting the optimal k-mer for genome size estimation

  schatzlab/genomescope#160 · Filter by author desmodus1984 opened on Sep 10, 2025
  2

• How to interpret the output of GenomeScope 2.0

  schatzlab/genomescope#159 · Filter by author Abieskawa opened on Jun 18, 2025
  1

• Using --transform_exp for fitting

  schatzlab/genomescope#158 · Filter by author Yahagi-yz opened on May 22, 2025
  3

• Question about GenomeScope2 Output on a Triploid Plant Sample

  schatzlab/genomescope#156 · Filter by author jiajiayiliu opened on Apr 18, 2025
  1

• Question about Genome Size Estimation Discrepancy between GenomeScope and Survey Data

  schatzlab/genomescope#155 · Filter by author C-YONG opened on Mar 28, 2025
  3

• Model fitting issue with HiFi data

  schatzlab/genomescope#154 · Filter by author hilee3 opened on Feb 23, 2025
  3

• Genomescope model not converged and weird peaks

  schatzlab/genomescope#152 · Filter by author Samyuktha9624 opened on Jan 14, 2025
  2

• genomescope2 underestimate the genome size of autotetraploid （a fish from Tibet Plateau，China )

  schatzlab/genomescope#150 · Filter by author valeryzhu opened on Dec 28, 2024
  3

• Feature request: fail on low coverage spectra

  schatzlab/genomescope#148 · Filter by author KamilSJaron opened on Dec 18, 2024
  4

• My results are inconsistent with others. How should I make adjustments

  schatzlab/genomescope#147 · Filter by author he2025 opened on Dec 16, 2024
  1

• understanding cause of poor model fit of heterozygote peak

  schatzlab/genomescope#144 · Filter by author andrbern8000 opened on Sep 30, 2024
  4

• I am a user of the genomescope software and have encountered some problems and seek your help. I hope to get your reply.

  schatzlab/genomescope#143 · Filter by author wjw-yj opened on Sep 27, 2024
  10

• haploid vs diploid graph models for unidentified ploidy

  schatzlab/genomescope#142 · Filter by author gunjanpandey opened on Sep 26, 2024
  1

• tetraploid genome result interpretation

  schatzlab/genomescope#141 · Filter by author Liyong-Zhang opened on Sep 25, 2024
  6

• Please help me to understand output

  schatzlab/genomescope#135 · Filter by author OrsonMM opened on Aug 12, 2024
  1

• Should a larger K value be chosen?

  schatzlab/genomescope#133 · Filter by author GLking123 opened on Jun 25, 2024
  4