v3seq is a quick pipeline that extracts reads overlapping V3 by aligning
them with blastx-fast to a set of V3 consensus sequences (taken from
this paper). Reads are then
oriented in the correct direction, an MSA is produced and a rough estimate
of haplotypes is returned by counting identical sequences over the V3 region.
Folders and files
| Name | Name | Last commit date | ||
|---|---|---|---|---|