Bailey Lab
Studying the genetics and genomics of infectious disease and immunity
- 19 followers
- Providence, RI
- http://www.baileylab.org/
- @baileygenomics
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Repositories
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- MIPWrangler Public
Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results
- compilerProfiler Public
C++ library with an aligner to test different compiler speeds with different optimizations
- Po_popgen_snakemake Public
- msmt_dr_longitudinal_21-23 Public
repo for a manuscript describing msmt longitudinal data from 2021-2023
- count_undetermined_sample_barcodes Public
when demultiplexing fails, we need the ability to figure out which sample barcodes were present and in what abundances. This allows us to figure out if the 'wrong' barcodes were applied to the samples or if the barcoding failed.
- haplotype_variant_calling Public
uses Nick Hathaway's variantCallOnSeqAndProtein script to call variants on vcf files and generate prevalences and amino acid calls