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AstroAgents
AstroAgents PublicAstroAgents: Multi-Agent AI for Hypothesis Generation from Mass Spectrometry Data
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InteractionRecovery
InteractionRecovery PublicOfficial code repository for On Recovering Higher-order Interactions from Protein Language Models
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Repositories
- astra Public
ASTRA : Autonomous Multi-Agent Reconstruction of Prebiotic Reaction Networks Reveals Organizational Features of Amino Acid Synthesis
- eWHT_expts Public
Repository to reproduce experiments from Protein Fitness Landscapes Are Simpler Under Evolutionary Distributions
- ProGenMech Public
Official code repository for Circuit Tracing in Autoregressive Protein Language Models
- cryoSENSE Public
(CVPR 2026) Compressive Sensing Enables High-throughput Microscopy with Sparse and Generative Priors (Diffusion Model) on the Protein Cryo-EM Image Manifold
- ProtoMech Public
(ICML 2026) Official code repository for Protein Circuit Tracing via Cross-layer Transcoders
- GOLF Public
Official code repository for GOLF: A Generative AI Framework for Pathogenicity Prediction of Myocilin OLF Variants
- shap-zero Public
Pip package for amortized Shapley values and interactions in biological sequence models
- LowNSAE Public
Official code repository for Sparse Autoencoders for Low-N Protein Function Prediction and Design
- LifeTracer Public
LifeTracer: comprehensive Python package for 2D gas chromatography analysis and signature discovery (PNAS Nexus)
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