fix: integration test failing on Windows CI - #4
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pytest's tmp_path can land on a different drive than the checkout on Windows runners, and Snakemake's relative-path handling then fails with "path is on mount 'D:', start on mount 'C:'". Use a temp directory under the checkout itself instead, so it's always on the same drive as the Snakefile and conda prefix.
bobbyxng
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pytest's tmp_path can land on a different drive than the checkout on Windows runners, and Snakemake's relative-path handling then fails with "path is on mount 'D:', start on mount 'C:'".
Summary of changes in this pull request
Reviewer checklist
pipdependencies in the module's environment files (workflow/envs/).pathvars(e.g.,<results>) in their inputs and outputs.pre-commit.citests pass.