(DRAFT) Add graphviz and ipycytoscape plus their tests for Dask graph visualization - #62
Draft
eshntmshra wants to merge 1 commit into
Draft
(DRAFT) Add graphviz and ipycytoscape plus their tests for Dask graph visualization #62eshntmshra wants to merge 1 commit into
eshntmshra wants to merge 1 commit into
Conversation
… their corresponding tests
eshntmshra
changed the title
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Adds the two Dask graph-visualization engines to the geolab-base image so that dask task-graph visualization (
.visualize()) works out of the box. Neither was installed before, so.visualize()failed with "No visualization engine detected, please install graphviz or ipycytoscape."Packages added (
environment.yml):python-graphviz: renders a static task-graph image (Visualization group)ipycytoscape: renders an interactive in-notebook task-graph widget (Interactive widgets group)Tests added (
test_packages.pyandtest_notebook.ipynb):test_graphviz: render a Dask task graph to a PNG.test_ipycytoscape: render a Dask task graph and confirm it returns a CytoscapeWidgetSince both packages do not exist in the environment currently, installed both packages into the environment and confirmed that all tests path in both
test_packages.pyandtest_notebook.ipynb.