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Pull requests: COMBINE-lab/salmon

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Pull requests list

fix(infer): thread-count-independent EM reduction on the deterministic paths (fixes flaky thread_count_invariant)
#1056 opened Jul 11, 2026 by rob-p Collaborator Loading…
docs(readme): add CI/release/bioconda/homebrew/docker/license/DOI badges
#1054 opened Jul 10, 2026 by BenjaminDEMAILLE Contributor Loading…
bias: abundance-free within-transcript GC-bias estimator (opt-in --gcBiasMethod within-txp) [post-2.3.2]
#1050 opened Jul 9, 2026 by rob-p Collaborator • Draft
feat(gpu): optional GPU backend for selective alignment (--gpu, deterministic, off by default)
#1041 opened Jun 30, 2026 by BenjaminDEMAILLE Contributor Loading…
1
ci: publish a Debian/Ubuntu apt repository on each release
#1036 opened Jun 21, 2026 by BenjaminDEMAILLE Contributor Loading…
1
feat(quant): add --writeBam (BGZF BAM alignment output)
#1029 opened Jun 20, 2026 by BenjaminDEMAILLE Contributor Loading…
3
Only select LLVM's libc++ for APPLE platforms.
#970 opened Oct 23, 2024 by dslarm Loading…
1
1
Performance fix: don't let boost promote doubles to long doubles
#968 opened Oct 23, 2024 by dslarm Loading…
1
Allow custom geometry single-cell protocols
#734 opened Jan 14, 2022 by Gaura Collaborator Loading…
41
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