Repository navigation
Add monitored database query jobs and publish 0.6.0 extensions - #4
Merged
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
CDWAgent 0.6.0
Long database operations can now run as detached local jobs through MCP or CLI.
Submission returns immediately; agents monitor phase, heartbeat, row/byte counts,
elapsed time and advisory ETA. Results stream to private CSV/JSONL files and are
published as complete only on success. Cancellation, wall-clock and disk budgets,
worker-loss detection and explicit cleanup are supported. Credentials remain in
the connector/worker or OS keyring, outside tool arguments and job-status data.
The repository now includes a deterministic installable BRXT, lockfile, checksum,
bundled query-job skill, installation documentation, tests and release automation.
No-argument CLI invocation remains an MCP stdio server.
CDW patient lookups use an explicit identifier type to prevent ambiguous patient matches. Use id_type="PatientKey" for surrogate IDs. Preview limits are 1–1000 with truncation notices. Metadata counts are labeled estimates; cohort errors no longer trigger a misleading surrogate-key fallback. Legacy CSV export requires a new filename and publishes atomically. Schema tools now paginate and distinguish the bundled dictionary from live DB truth. Raw SQL audit logging requires explicit opt-in.
Validation includes offline lifecycle/security/domain tests and live small queries,
10,000-row real-table exports, 100,000-row generated transfers, parameterized
queries, EXPLAIN jobs, CLI monitoring after submit exits, cancellation, and the
BioRouter agent execution path with a deterministic local provider fixture.
Clinical tests selected constants from real tables, not patient details.
Jobs survive MCP/chat disconnects, not host shutdown. Interrupted exports require
explicit resubmission; arbitrary queries do not have automatic checkpoint/resume.
Network, permissions, database resource limits and disk exhaustion can still fail.
These limits are reported; this release does not promise every query can succeed.
Dependency locks were refreshed to patched releases, including cryptography 50+.
The old Intel macOS compatibility cap was removed; Intel installations without a
compatible wheel may require Rust/OpenSSL build prerequisites. pip-audit found no
known vulnerabilities in the resolved dependency set on the test platform.