Update SciML src and tests to use libpetab linting

[BSnelling]

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[codecov]

Codecov Report

❌ Patch coverage is 89.47368% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 48.90%. Comparing base (3a1babe) to head (f9893da).

Files with missing lines	Patch %	Lines
python/sdist/amici/sim/jax/petab.py	88.23%	2 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (3a1babe) and HEAD (f9893da). Click for more details.

HEAD has 11 uploads less than BASE

Flag	BASE (3a1babe)	HEAD (f9893da)
python	11	4
sbmlsuite-jax	3	0
cpp	1	0

Additional details and impacted files

@@             Coverage Diff             @@
##             main    #3194       +/-   ##
===========================================
- Coverage   75.73%   48.90%   -26.84%     
===========================================
  Files         317      317               
  Lines       20903    20871       -32     
  Branches     1484     1483        -1     
===========================================
- Hits        15830    10206     -5624     
- Misses       5061    10558     +5497     
- Partials       12      107       +95     

Flag	Coverage Δ
cpp	?
cpp_python	36.75% <0.00%> (+0.04%)	⬆️
petab	40.10% <0.00%> (+0.02%)	⬆️
petab_sciml	15.42% <89.47%> (?)
python	36.90% <0.00%> (-31.42%)	⬇️
sbmlsuite-jax	?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
...hon/sdist/amici/importers/petab/_petab_importer.py	52.40% <100.00%> (+2.02%)	⬆️
python/sdist/amici/sim/jax/petab.py	76.29% <88.23%> (+17.72%)	⬆️

... and 212 files with indirect coverage changes

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