spatial_metadata_v1-0.csv

source.label,sample,description,tissue,subtissue,comments,include,species,GSE.accession,GSM.accession,chemistry,file.format,SRR.accession,experiment.accession,study.accession,sample.accession,SAMN.accession,file_link,file_checksum,other.accession,source,manuscript.doi,manuscript.pubmed,experiment.instrument,study.title,study.abstract
Asp 2019,,A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart,heart,,"Data at EGA, not GEO",FALSE,Homo sapiens,EGAS00001003996,,,,,,,,,,,,,,,,,
Mantri 2021,Chicken_heart_spatial_RNAseq_D4,,heart,,,TRUE,Gallus gallus,GSE149457,GSM4502482,visium_v1,fastq,SRR11616463,,,,,,,,,,,,,
Mantri 2021,Chicken_heart_spatial_RNAseq_D7,,heart,,,TRUE,Gallus gallus,GSE149457,GSM4502483,visium_v1,fastq,SRR11616464,,,,,,,,,,,,,
Mantri 2021,Chicken_heart_spatial_RNAseq_D10,,heart,,,TRUE,Gallus gallus,GSE149457,GSM4502484,visium_v1,fastq,SRR11616465,,,,,,,,,,,,,
Mantri 2021,Chicken_heart_spatial_RNAseq_D14,,heart,,,TRUE,Gallus gallus,GSE149457,GSM4502485,visium_v1,fastq,SRR11616466,,,,,,,,,,,,,
Porritt 2021,LCWE [Spatial transcriptomics],,heart,,,TRUE,Mus musculus,GSE178799 ,GSM5397926,visium_v1,bam,SRR14902334,,,,,,,,,,,,,
Porritt 2021,PBS [Spatial transcriptomics],,heart,,,TRUE,Mus musculus,GSE178799 ,GSM5397927,visium_v1,bam,SRR14902335,,,,,,,,,,,,,
Wu 2021,Heart.Visium.E13.5.rep1,,heart,,,TRUE,Mus musculus,GSE179392,GSM5416753,visium_v1,fastq,SRR15035110,,,,,,,,,,,,,
Wu 2021,Heart.Visium.E13.5.rep2,,heart,,,TRUE,Mus musculus,GSE179392,GSM5416754,visium_v1,fastq,SRR15035111,,,,,,,,,,,,,
Wu 2021,Heart.Visium.E15.5.rep1,,heart,,,TRUE,Mus musculus,GSE179392,GSM5416755,visium_v1,fastq,SRR15035112,,,,,,,,,,,,,
Wu 2021,Heart.Visium.E15.5.rep2,,heart,,,TRUE,Mus musculus,GSE179392,GSM5416756,visium_v1,fastq,SRR15035113,,,,,,,,,,,,,
Jin 2021,CB1-YDJ-1,,muscle,,,TRUE,Sus scrofa,GSE161882,GSM4916374,visium_v1,fastq,SRR12390914,,,,,,,,,,,,,
Jin 2021,CB1-YDJ-2,,muscle,,,TRUE,Sus scrofa,GSE161882,GSM4916375,visium_v1,fastq,SRR12390913,,,,,,,,,,,,,
McKellar 2021,Vis5A,,muscle,tibialis anterior,,TRUE,Mus musculus,GSE161318,GSM4904759,visium_v1,fastq,SRR13040047,,,,,,,,,,,,,
McKellar 2021,Vis7B,,muscle,tibialis anterior,,TRUE,Mus musculus,GSE161318,GSM4904760,visium_v1,fastq,SRR13040048,,,,,,,,,,,,,
McKellar 2021,Vis9A,,muscle,tibialis anterior,,TRUE,Mus musculus,GSE161318,GSM4904761,visium_v1,fastq,SRR13040049,,,,,,,,,,,,,
Small 2021,A3d,,heart,apex,,TRUE,Mus musculus,GSE188888,GSM5691526,visium_v1,fastq,SRR16952413;SRR16952414,,,,,,,,,,,,,
Small 2021,C7d,,heart,apex,,TRUE,Mus musculus,GSE188888,GSM5691527,visium_v1,fastq,SRR16952415;SRR16952416,,,,,,,,,,,,,
Small 2021,E14d,,heart,apex,,TRUE,Mus musculus,GSE188888,GSM5691528,visium_v1,fastq,SRR16952417;SRR16952418,,,,,,,,,,,,,
Small 2021,G21d,,heart,apex,,TRUE,Mus musculus,GSE188888,GSM5691529,visium_v1,fastq,SRR16952419;SRR16952420,,,,,,,,,,,,,
Zeng 2022,T2_bzcj2,,muscle,longitissimus dorsi,SRA IDs missing,TRUE,Sus scrofa,GSE203094,GSM6153747,visium_v1,ERR,,,,,,,,,,,,,,
Zeng 2022,B1_bzcj2,,muscle,longitissimus dorsi,SRA IDs missing,TRUE,Sus scrofa,GSE203094,GSM6153748,visium_v1,ERR,,,,,,,,,,,,,,
Zeng 2022,B2_bzcj3,,muscle,longitissimus dorsi,SRA IDs missing,TRUE,Sus scrofa,GSE203094,GSM6153749,visium_v1,ERR,,,,,,,,,,,,,,
Jung 2022,Day 1 post-MI VISIUM,,heart,myocardial infarction,,TRUE,Mus musculus,GSE165857,GSM5051464,visium_v1,fastq,SRR13592082,,,,,,,,,,,,,
Jung 2022,Day 3 post-MI VISIUM,,heart,myocardial infarction,,TRUE,Mus musculus,GSE165857,GSM5051465,visium_v1,fastq,SRR13592083,,,,,,,,,,,,,
Jung 2022,Day 5 post-MI VISIUM,,heart,myocardial infarction,,TRUE,Mus musculus,GSE165857,GSM5051466,visium_v1,fastq,SRR13592084,,,,,,,,,,,,,
Jung 2022,Day 7 post-MI VISIUM,,heart,myocardial infarction,,TRUE,Mus musculus,GSE165857,GSM5051467,visium_v1,fastq,SRR13592085,,,,,,,,,,,,,
Yamada 2022,Spatial_Csrp3OE_MI_day14,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943199,visium_v1,fastq,SRR18297085,,,,,,,,,,,,,
Yamada 2022,Spatial_Csrp3OE_MI_day1,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943198,visium_v1,fastq,SRR18297084,,,,,,,,,,,,,
Yamada 2022,Spatial_shCsrp3_MI_day14,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943197,visium_v1,fastq,SRR18297083,,,,,,,,,,,,,
Yamada 2022,Spatial_shCsrp3_MI_day1,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943196,visium_v1,fastq,SRR18297082,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day14_3,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943195,visium_v1,fastq,SRR18297081,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day14_2,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943194,visium_v1,fastq,SRR18297080,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day7_3,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943193,visium_v1,fastq,SRR18297079,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day7_2,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943192,visium_v1,fastq,SRR18297078,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day1_3,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943191,visium_v1,fastq,SRR18297077,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day1_2,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943190,visium_v1,fastq,SRR18297076,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day1_1,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5943189,visium_v1,fastq,SRR18297075,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day14_1,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5355668,visium_v1,fastq,SRR14716323,,,,,,,,,,,,,
Yamada 2022,Spatial_MI_day7_1,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5355666,visium_v1,fastq,SRR14716321,,,,,,,,,,,,,
Yamada 2022,Spatial_Sham,,heart,myocardial infarction,,TRUE,Mus musculus,GSE176092,GSM5355663,visium_v1,fastq,SRR14716318,,,,,,,,,,,,,
Cui 2021,P1MID7,,heart,myocardial infarction,,TRUE,Mus musculus,GSE163629,GSM4983123,visium_v1,bam,SRR13281533,,,,,,,,,,,,,
Cui 2021,P1ShamD3,,heart,myocardial infarction,,TRUE,Mus musculus,GSE163629,GSM5268644,visium_v1,bam,SRR14343879,,,,,,,,,,,,,
Cui 2021,P1ShamD7,,heart,myocardial infarction,,TRUE,Mus musculus,GSE163629,GSM5268645,visium_v1,bam,SRR14343880,,,,,,,,,,,,,
Cui 2021,P1MID3,,heart,myocardial infarction,,TRUE,Mus musculus,GSE163629,GSM5268646,visium_v1,bam,SRR14343881,,,,,,,,,,,,,
Cui 2021,P1MID7_rep2,,heart,myocardial infarction,,TRUE,Mus musculus,GSE163629,GSM5268647,visium_v1,bam,SRR14343882,,,,,,,,,,,,,