helix/pyproject.toml at main · VectorInstitute/helix · GitHub

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[project]
name = "helices"
version = "0.1.5"
description = "Framework for reproducible autonomous research loops"
readme = "README.md"
requires-python = ">=3.11"
license = { file = "LICENSE" }
dependencies = [
    "anyio>=4.13.0",
    "pydantic>=2.12.5",
    "pyyaml>=6.0.3",
    "rich>=14.3.3",
]

[project.optional-dependencies]
claude = ["claude-agent-sdk>=0.1.51"]

[project.scripts]
helix = "helix.cli:main"

[build-system]
requires = ["hatchling>=1.29.0"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["src/helix"]

[dependency-groups]
dev = [
    "claude-agent-sdk>=0.1.51",
    "cryptography>=46.0.7",
    "mypy>=1.19.1",
    "pre-commit>=4.2.0",
    "pytest>=8.3.5",
    "pytest-asyncio>=0.25.3",
    "pytest-cov>=6.0.0",
    "ruff>=0.15.8",
    "types-pyyaml>=6.0.12",
]

[tool.uv]
default-groups = ["dev"]
constraint-dependencies = [
    "click>=8.3.3",
    "idna>=3.15",
    "mcp>=1.28.1",
    "pydantic-settings>=2.14.2",
    "pyjwt>=2.14.0",
    "python-multipart>=0.0.31",
    "virtualenv>=21.7.13",
    "starlette>=1.3.1",
]

[tool.pytest.ini_options]
asyncio_mode = "auto"

[tool.mypy]
follow_imports = "normal"
ignore_missing_imports = true
install_types = true
pretty = true
non_interactive = true
allow_untyped_defs = false
no_implicit_optional = true
check_untyped_defs = true
namespace_packages = true
explicit_package_bases = true
warn_unused_configs = true
allow_subclassing_any = false
allow_untyped_calls = false
allow_incomplete_defs = false
allow_untyped_decorators = false
warn_redundant_casts = true
warn_unused_ignores = true
implicit_reexport = false
strict_equality = true
extra_checks = true

[tool.coverage.run]
source = ["src/helix"]
omit = ["tests/*", "*__init__.py"]

[tool.ruff]
include = ["*.py", "pyproject.toml"]
line-length = 120

[tool.ruff.format]
quote-style = "double"
indent-style = "space"
docstring-code-format = true

[tool.ruff.lint]
select = [
    "A",   # flake8-builtins
    "B",   # flake8-bugbear
    "COM", # flake8-commas
    "C4",  # flake8-comprehensions
    "RET", # flake8-return
    "SIM", # flake8-simplify
    "ICN", # flake8-import-conventions
    "Q",   # flake8-quotes
    "RSE", # flake8-raise
    "D",   # pydocstyle
    "E",   # pycodestyle
    "F",   # pyflakes
    "I",   # isort
    "W",   # pycodestyle
    "N",   # pep8-naming
    "ERA", # eradicate
    "PL",  # pylint
]
fixable = ["A", "B", "COM", "C4", "RET", "SIM", "ICN", "Q", "RSE", "D", "E", "F", "I", "W", "N", "ERA", "PL"]
ignore = [
    "B905",    # zip() without strict=
    "E501",    # line too long
    "D203",    # 1 blank line required before class docstring
    "D213",    # Multi-line docstring summary should start at the second line
    "PLR2004", # Replace magic number with named constant
    "PLR0913", # Too many arguments
    "COM812",  # Missing trailing comma
    "ERA001",  # Found commented-out code
]

[tool.ruff.lint.isort]
lines-after-imports = 2

[tool.ruff.lint.per-file-ignores]
"tests/*" = ["D"]

[tool.ruff.lint.pydocstyle]
convention = "numpy"

[tool.ruff.lint.pycodestyle]
max-doc-length = 120