From 2fcd722decd6f2f924997041011aec28f63215bc Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 21 May 2026 01:16:53 +0200 Subject: [PATCH 1/6] Add several missing ORCiD identifiers --- ontology/dinto.md | 3 ++- ontology/flu.md | 1 + ontology/fma.md | 3 ++- ontology/iao.md | 1 + ontology/idomal.md | 1 + ontology/mao.md | 1 + ontology/mirnao.md | 1 + ontology/miro.md | 1 + ontology/nmr.md | 3 ++- ontology/plo.md | 1 + ontology/propreo.md | 1 + ontology/sao.md | 1 + ontology/sopharm.md | 1 + ontology/tads.md | 1 + ontology/tahe.md | 1 + ontology/tahh.md | 1 + ontology/tgma.md | 1 + 17 files changed, 20 insertions(+), 3 deletions(-) diff --git a/ontology/dinto.md b/ontology/dinto.md index 7bbb47652..e33a28b83 100644 --- a/ontology/dinto.md +++ b/ontology/dinto.md @@ -4,7 +4,8 @@ id: dinto title: The Drug-Drug Interactions Ontology contact: email: maria.herrero@kcl.ac.uk - label: Maria Herrero + label: Maria Herrero-Zazo + orcid: 0000-0001-7793-3296 description: A formal represention for drug-drug interactions knowledge. domain: health homepage: http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto diff --git a/ontology/flu.md b/ontology/flu.md index 34f1d0232..8a6a44d6d 100644 --- a/ontology/flu.md +++ b/ontology/flu.md @@ -5,6 +5,7 @@ title: Influenza Ontology contact: email: burkesquires@gmail.com label: Burke Squires + orcid: 0000-0001-9666-6285 domain: health homepage: http://purl.obolibrary.org/obo/flu/ is_obsolete: true diff --git a/ontology/fma.md b/ontology/fma.md index 619f980ab..2da70ab0e 100644 --- a/ontology/fma.md +++ b/ontology/fma.md @@ -4,7 +4,8 @@ id: fma title: Foundational Model of Anatomy Ontology (subset) contact: email: mejino@u.washington.edu - label: Onard Mejino + label: Jose Leonardo (Onard) Mejino + orcid: 0000-0003-2105-2283 description: This is currently a slimmed down version of FMA domain: anatomy and development homepage: http://si.washington.edu/projects/fma diff --git a/ontology/iao.md b/ontology/iao.md index 7381ae99a..9c638d4d9 100644 --- a/ontology/iao.md +++ b/ontology/iao.md @@ -27,6 +27,7 @@ products: contact: email: mbrochhausen@gmail.com label: Mathias Brochhausen + orcid: 0000-0003-1834-3856 description: An ontology based on a theory of document acts describing what people can do with documents repository: https://github.com/information-artifact-ontology/IAO tracker: https://github.com/information-artifact-ontology/IAO/issues diff --git a/ontology/idomal.md b/ontology/idomal.md index a5968b266..8521aacab 100644 --- a/ontology/idomal.md +++ b/ontology/idomal.md @@ -5,6 +5,7 @@ title: Malaria Ontology contact: email: topalis@imbb.forth.gr label: Pantelis Topalis + orcid: 0000-0002-1635-4810 description: An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. domain: health homepage: https://www.vectorbase.org/ontology-browser diff --git a/ontology/mao.md b/ontology/mao.md index f6cff2eaf..f4cc49fe5 100644 --- a/ontology/mao.md +++ b/ontology/mao.md @@ -5,6 +5,7 @@ title: Multiple alignment contact: email: julie@igbmc.u-strasbg.fr label: Julie Thompson + orcid: 0000-0003-4893-3478 domain: chemistry and biochemistry homepage: http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html is_obsolete: true diff --git a/ontology/mirnao.md b/ontology/mirnao.md index 212420406..e78ea07df 100644 --- a/ontology/mirnao.md +++ b/ontology/mirnao.md @@ -5,6 +5,7 @@ title: microRNA Ontology contact: email: topalis@imbb.forth.gr label: Pantelis Topalis + orcid: 0000-0002-1635-4810 description: An application ontology for use with miRNA databases. domain: chemistry and biochemistry homepage: http://code.google.com/p/mirna-ontology/ diff --git a/ontology/miro.md b/ontology/miro.md index e761c8079..145079e82 100644 --- a/ontology/miro.md +++ b/ontology/miro.md @@ -5,6 +5,7 @@ title: Mosquito insecticide resistance contact: email: louis@imbb.forth.gr label: Christos (Kitsos) Louis + orcid: 0000-0003-2497-2210 description: Application ontology for entities related to insecticide resistance in mosquitos domain: environment products: diff --git a/ontology/nmr.md b/ontology/nmr.md index addd0c6f2..f47cf49e8 100644 --- a/ontology/nmr.md +++ b/ontology/nmr.md @@ -4,7 +4,8 @@ id: nmr title: NMR-instrument specific component of metabolomics investigations contact: email: schober@imbi.uni-freiburg.de - label: Schober Daniel + label: Daniel Schober + orcid: 0000-0001-8014-6648 description: Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation. domain: investigations homepage: http://msi-ontology.sourceforge.net/ diff --git a/ontology/plo.md b/ontology/plo.md index 09cde31a9..d3686aa6b 100644 --- a/ontology/plo.md +++ b/ontology/plo.md @@ -5,6 +5,7 @@ title: Plasmodium life cycle contact: email: mb4@sanger.ac.uk label: Matt Berriman + orcid: 0000-0002-9581-0377 domain: anatomy and development homepage: http://www.sanger.ac.uk/Users/mb4/PLO/ is_obsolete: true diff --git a/ontology/propreo.md b/ontology/propreo.md index 1481e19d1..7597feb10 100644 --- a/ontology/propreo.md +++ b/ontology/propreo.md @@ -5,6 +5,7 @@ title: Proteomics data and process provenance contact: email: satya30@uga.edu label: Satya S. Sahoo + orcid: 0000-0001-9190-4256 domain: chemistry and biochemistry homepage: http://lsdis.cs.uga.edu/projects/glycomics/propreo/ is_obsolete: true diff --git a/ontology/sao.md b/ontology/sao.md index bbda02356..219117b2e 100644 --- a/ontology/sao.md +++ b/ontology/sao.md @@ -5,6 +5,7 @@ title: Subcellular anatomy ontology contact: email: slarson@ncmir.ucsd.edu label: Stephen Larson + orcid: 0000-0001-5397-6208 domain: anatomy and development homepage: http://ccdb.ucsd.edu/CCDBWebSite/sao.html is_obsolete: true diff --git a/ontology/sopharm.md b/ontology/sopharm.md index 91b726443..2c6f324d3 100644 --- a/ontology/sopharm.md +++ b/ontology/sopharm.md @@ -5,6 +5,7 @@ title: Suggested Ontology for Pharmacogenomics contact: email: Adrien.Coulet@loria.fr label: Adrien Coulet + orcid: 0000-0002-1466-062X domain: chemistry and biochemistry homepage: http://www.loria.fr/~coulet/sopharm2.0_description.php is_obsolete: true diff --git a/ontology/tads.md b/ontology/tads.md index fcd4f7178..646ce06ff 100644 --- a/ontology/tads.md +++ b/ontology/tads.md @@ -5,6 +5,7 @@ title: Tick Anatomy Ontology contact: email: dsonensh@odu.edu label: Daniel Sonenshine + orcid: 0000-0001-9370-918X description: 'The anatomy of the Tick, Families: Ixodidae, Argassidae' domain: anatomy and development homepage: https://www.vectorbase.org/ontology-browser diff --git a/ontology/tahe.md b/ontology/tahe.md index 7b6e64dfc..68995cab7 100644 --- a/ontology/tahe.md +++ b/ontology/tahe.md @@ -5,6 +5,7 @@ title: Terminology of Anatomy of Human Embryology contact: email: pierre.sprumont@unifr.ch label: Pierre Sprumont + orcid: 0000-0003-4933-045X domain: anatomy and development homepage: null is_obsolete: true diff --git a/ontology/tahh.md b/ontology/tahh.md index 943db5428..3f88fcc7d 100644 --- a/ontology/tahh.md +++ b/ontology/tahh.md @@ -5,6 +5,7 @@ title: Terminology of Anatomy of Human Histology contact: email: pierre.sprumont@unifr.ch label: Pierre Sprumont + orcid: 0000-0003-4933-045X domain: health homepage: null is_obsolete: true diff --git a/ontology/tgma.md b/ontology/tgma.md index a4b08c7fa..a9e1151ae 100644 --- a/ontology/tgma.md +++ b/ontology/tgma.md @@ -5,6 +5,7 @@ title: Mosquito gross anatomy ontology contact: email: topalis@imbb.forth.gr label: Pantelis Topalis + orcid: 0000-0002-1635-4810 description: A structured controlled vocabulary of the anatomy of mosquitoes. domain: anatomy and development homepage: https://www.vectorbase.org/ontology-browser From cd911e7363c62a43cd509fc6c2f5d14c8f9baaf1 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Thu, 21 May 2026 12:54:41 +0200 Subject: [PATCH 2/6] Remove Pierre ORCiD --- ontology/tahe.md | 1 - ontology/tahh.md | 1 - 2 files changed, 2 deletions(-) diff --git a/ontology/tahe.md b/ontology/tahe.md index 68995cab7..7b6e64dfc 100644 --- a/ontology/tahe.md +++ b/ontology/tahe.md @@ -5,7 +5,6 @@ title: Terminology of Anatomy of Human Embryology contact: email: pierre.sprumont@unifr.ch label: Pierre Sprumont - orcid: 0000-0003-4933-045X domain: anatomy and development homepage: null is_obsolete: true diff --git a/ontology/tahh.md b/ontology/tahh.md index 3f88fcc7d..943db5428 100644 --- a/ontology/tahh.md +++ b/ontology/tahh.md @@ -5,7 +5,6 @@ title: Terminology of Anatomy of Human Histology contact: email: pierre.sprumont@unifr.ch label: Pierre Sprumont - orcid: 0000-0003-4933-045X domain: health homepage: null is_obsolete: true From 2288fde857e9c13f8a234c7e1660abd55dfd11c4 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Fri, 19 Jun 2026 10:13:54 +0200 Subject: [PATCH 3/6] add some githubs --- ontology/dinto.md | 1 + ontology/flu.md | 1 + ontology/fma.md | 1 + ontology/iao.md | 1 + ontology/idomal.md | 1 + ontology/omiabis.md | 1 + 6 files changed, 6 insertions(+) diff --git a/ontology/dinto.md b/ontology/dinto.md index e33a28b83..13d82d9bf 100644 --- a/ontology/dinto.md +++ b/ontology/dinto.md @@ -6,6 +6,7 @@ contact: email: maria.herrero@kcl.ac.uk label: Maria Herrero-Zazo orcid: 0000-0001-7793-3296 + github: mariaheza description: A formal represention for drug-drug interactions knowledge. domain: health homepage: http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto diff --git a/ontology/flu.md b/ontology/flu.md index 8a6a44d6d..5c2bbc763 100644 --- a/ontology/flu.md +++ b/ontology/flu.md @@ -6,6 +6,7 @@ contact: email: burkesquires@gmail.com label: Burke Squires orcid: 0000-0001-9666-6285 + github: burkesquires domain: health homepage: http://purl.obolibrary.org/obo/flu/ is_obsolete: true diff --git a/ontology/fma.md b/ontology/fma.md index 2da70ab0e..85a7db5f6 100644 --- a/ontology/fma.md +++ b/ontology/fma.md @@ -6,6 +6,7 @@ contact: email: mejino@u.washington.edu label: Jose Leonardo (Onard) Mejino orcid: 0000-0003-2105-2283 + github: Onard description: This is currently a slimmed down version of FMA domain: anatomy and development homepage: http://si.washington.edu/projects/fma diff --git a/ontology/iao.md b/ontology/iao.md index 9c638d4d9..7b21d8675 100644 --- a/ontology/iao.md +++ b/ontology/iao.md @@ -28,6 +28,7 @@ products: email: mbrochhausen@gmail.com label: Mathias Brochhausen orcid: 0000-0003-1834-3856 + github: mbrochhausen description: An ontology based on a theory of document acts describing what people can do with documents repository: https://github.com/information-artifact-ontology/IAO tracker: https://github.com/information-artifact-ontology/IAO/issues diff --git a/ontology/idomal.md b/ontology/idomal.md index 8521aacab..4a7884086 100644 --- a/ontology/idomal.md +++ b/ontology/idomal.md @@ -6,6 +6,7 @@ contact: email: topalis@imbb.forth.gr label: Pantelis Topalis orcid: 0000-0002-1635-4810 + github: topalis description: An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. domain: health homepage: https://www.vectorbase.org/ontology-browser diff --git a/ontology/omiabis.md b/ontology/omiabis.md index 0d2aea528..0eb39c56e 100644 --- a/ontology/omiabis.md +++ b/ontology/omiabis.md @@ -6,6 +6,7 @@ contact: email: mbrochhausen@gmail.com label: Mathias Brochhausen orcid: 0000-0003-1834-3856 + github: mbrochhausen description: An ontological version of MIABIS (Minimum Information About BIobank data Sharing) domain: health homepage: https://github.com/OMIABIS/omiabis-dev From 165194f2ef92ee63d02dad4a7d15fd1a3904ce34 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Fri, 19 Jun 2026 10:23:20 +0200 Subject: [PATCH 4/6] Add remaining githubs --- ontology/mirnao.md | 1 + ontology/nmr.md | 1 + ontology/plo.md | 1 + ontology/sao.md | 1 + ontology/sopharm.md | 1 + 5 files changed, 5 insertions(+) diff --git a/ontology/mirnao.md b/ontology/mirnao.md index e78ea07df..65b52420c 100644 --- a/ontology/mirnao.md +++ b/ontology/mirnao.md @@ -6,6 +6,7 @@ contact: email: topalis@imbb.forth.gr label: Pantelis Topalis orcid: 0000-0002-1635-4810 + github: topalis description: An application ontology for use with miRNA databases. domain: chemistry and biochemistry homepage: http://code.google.com/p/mirna-ontology/ diff --git a/ontology/nmr.md b/ontology/nmr.md index f47cf49e8..d0b2a43ee 100644 --- a/ontology/nmr.md +++ b/ontology/nmr.md @@ -6,6 +6,7 @@ contact: email: schober@imbi.uni-freiburg.de label: Daniel Schober orcid: 0000-0001-8014-6648 + github: DSchober description: Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation. domain: investigations homepage: http://msi-ontology.sourceforge.net/ diff --git a/ontology/plo.md b/ontology/plo.md index d3686aa6b..edaf7979e 100644 --- a/ontology/plo.md +++ b/ontology/plo.md @@ -6,6 +6,7 @@ contact: email: mb4@sanger.ac.uk label: Matt Berriman orcid: 0000-0002-9581-0377 + github: mberriman domain: anatomy and development homepage: http://www.sanger.ac.uk/Users/mb4/PLO/ is_obsolete: true diff --git a/ontology/sao.md b/ontology/sao.md index 219117b2e..1580f789c 100644 --- a/ontology/sao.md +++ b/ontology/sao.md @@ -6,6 +6,7 @@ contact: email: slarson@ncmir.ucsd.edu label: Stephen Larson orcid: 0000-0001-5397-6208 + github: slarson domain: anatomy and development homepage: http://ccdb.ucsd.edu/CCDBWebSite/sao.html is_obsolete: true diff --git a/ontology/sopharm.md b/ontology/sopharm.md index 2c6f324d3..dbc6c4772 100644 --- a/ontology/sopharm.md +++ b/ontology/sopharm.md @@ -6,6 +6,7 @@ contact: email: Adrien.Coulet@loria.fr label: Adrien Coulet orcid: 0000-0002-1466-062X + github: coulet domain: chemistry and biochemistry homepage: http://www.loria.fr/~coulet/sopharm2.0_description.php is_obsolete: true From d213e60d1240c65936078bbc49780d571c1ad618 Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Fri, 19 Jun 2026 10:23:56 +0200 Subject: [PATCH 5/6] Lint markdown --- ontology/dinto.md | 2 +- ontology/flu.md | 2 +- ontology/fma.md | 2 +- ontology/iao.md | 2 +- ontology/idomal.md | 2 +- ontology/mirnao.md | 2 +- ontology/nmr.md | 2 +- ontology/omiabis.md | 2 +- ontology/plo.md | 2 +- ontology/sao.md | 2 +- ontology/sopharm.md | 2 +- 11 files changed, 11 insertions(+), 11 deletions(-) diff --git a/ontology/dinto.md b/ontology/dinto.md index 13d82d9bf..163dadef2 100644 --- a/ontology/dinto.md +++ b/ontology/dinto.md @@ -4,9 +4,9 @@ id: dinto title: The Drug-Drug Interactions Ontology contact: email: maria.herrero@kcl.ac.uk + github: mariaheza label: Maria Herrero-Zazo orcid: 0000-0001-7793-3296 - github: mariaheza description: A formal represention for drug-drug interactions knowledge. domain: health homepage: http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto diff --git a/ontology/flu.md b/ontology/flu.md index 5c2bbc763..3d543893f 100644 --- a/ontology/flu.md +++ b/ontology/flu.md @@ -4,9 +4,9 @@ id: flu title: Influenza Ontology contact: email: burkesquires@gmail.com + github: burkesquires label: Burke Squires orcid: 0000-0001-9666-6285 - github: burkesquires domain: health homepage: http://purl.obolibrary.org/obo/flu/ is_obsolete: true diff --git a/ontology/fma.md b/ontology/fma.md index 85a7db5f6..abc30a261 100644 --- a/ontology/fma.md +++ b/ontology/fma.md @@ -4,9 +4,9 @@ id: fma title: Foundational Model of Anatomy Ontology (subset) contact: email: mejino@u.washington.edu + github: Onard label: Jose Leonardo (Onard) Mejino orcid: 0000-0003-2105-2283 - github: Onard description: This is currently a slimmed down version of FMA domain: anatomy and development homepage: http://si.washington.edu/projects/fma diff --git a/ontology/iao.md b/ontology/iao.md index 7b21d8675..041016ef7 100644 --- a/ontology/iao.md +++ b/ontology/iao.md @@ -26,9 +26,9 @@ products: title: ontology of document acts contact: email: mbrochhausen@gmail.com + github: mbrochhausen label: Mathias Brochhausen orcid: 0000-0003-1834-3856 - github: mbrochhausen description: An ontology based on a theory of document acts describing what people can do with documents repository: https://github.com/information-artifact-ontology/IAO tracker: https://github.com/information-artifact-ontology/IAO/issues diff --git a/ontology/idomal.md b/ontology/idomal.md index 4a7884086..d7b703d7c 100644 --- a/ontology/idomal.md +++ b/ontology/idomal.md @@ -4,9 +4,9 @@ id: idomal title: Malaria Ontology contact: email: topalis@imbb.forth.gr + github: topalis label: Pantelis Topalis orcid: 0000-0002-1635-4810 - github: topalis description: An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. domain: health homepage: https://www.vectorbase.org/ontology-browser diff --git a/ontology/mirnao.md b/ontology/mirnao.md index 65b52420c..91f1bdb1b 100644 --- a/ontology/mirnao.md +++ b/ontology/mirnao.md @@ -4,9 +4,9 @@ id: mirnao title: microRNA Ontology contact: email: topalis@imbb.forth.gr + github: topalis label: Pantelis Topalis orcid: 0000-0002-1635-4810 - github: topalis description: An application ontology for use with miRNA databases. domain: chemistry and biochemistry homepage: http://code.google.com/p/mirna-ontology/ diff --git a/ontology/nmr.md b/ontology/nmr.md index d0b2a43ee..28dacbccf 100644 --- a/ontology/nmr.md +++ b/ontology/nmr.md @@ -4,9 +4,9 @@ id: nmr title: NMR-instrument specific component of metabolomics investigations contact: email: schober@imbi.uni-freiburg.de + github: DSchober label: Daniel Schober orcid: 0000-0001-8014-6648 - github: DSchober description: Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation. domain: investigations homepage: http://msi-ontology.sourceforge.net/ diff --git a/ontology/omiabis.md b/ontology/omiabis.md index 0eb39c56e..fa8a15563 100644 --- a/ontology/omiabis.md +++ b/ontology/omiabis.md @@ -4,9 +4,9 @@ id: omiabis title: Ontologized MIABIS contact: email: mbrochhausen@gmail.com + github: mbrochhausen label: Mathias Brochhausen orcid: 0000-0003-1834-3856 - github: mbrochhausen description: An ontological version of MIABIS (Minimum Information About BIobank data Sharing) domain: health homepage: https://github.com/OMIABIS/omiabis-dev diff --git a/ontology/plo.md b/ontology/plo.md index edaf7979e..70cbec538 100644 --- a/ontology/plo.md +++ b/ontology/plo.md @@ -4,9 +4,9 @@ id: plo title: Plasmodium life cycle contact: email: mb4@sanger.ac.uk + github: mberriman label: Matt Berriman orcid: 0000-0002-9581-0377 - github: mberriman domain: anatomy and development homepage: http://www.sanger.ac.uk/Users/mb4/PLO/ is_obsolete: true diff --git a/ontology/sao.md b/ontology/sao.md index 1580f789c..57d14bbc7 100644 --- a/ontology/sao.md +++ b/ontology/sao.md @@ -4,9 +4,9 @@ id: sao title: Subcellular anatomy ontology contact: email: slarson@ncmir.ucsd.edu + github: slarson label: Stephen Larson orcid: 0000-0001-5397-6208 - github: slarson domain: anatomy and development homepage: http://ccdb.ucsd.edu/CCDBWebSite/sao.html is_obsolete: true diff --git a/ontology/sopharm.md b/ontology/sopharm.md index dbc6c4772..47f5e1769 100644 --- a/ontology/sopharm.md +++ b/ontology/sopharm.md @@ -4,9 +4,9 @@ id: sopharm title: Suggested Ontology for Pharmacogenomics contact: email: Adrien.Coulet@loria.fr + github: coulet label: Adrien Coulet orcid: 0000-0002-1466-062X - github: coulet domain: chemistry and biochemistry homepage: http://www.loria.fr/~coulet/sopharm2.0_description.php is_obsolete: true From 0bae95ab15260b864b2923a2a4271cbb65039ccf Mon Sep 17 00:00:00 2001 From: Charles Tapley Hoyt Date: Fri, 19 Jun 2026 13:38:17 +0200 Subject: [PATCH 6/6] Update tgma.md --- ontology/tgma.md | 1 + 1 file changed, 1 insertion(+) diff --git a/ontology/tgma.md b/ontology/tgma.md index a9e1151ae..94a44959b 100644 --- a/ontology/tgma.md +++ b/ontology/tgma.md @@ -4,6 +4,7 @@ id: tgma title: Mosquito gross anatomy ontology contact: email: topalis@imbb.forth.gr + github: topalis label: Pantelis Topalis orcid: 0000-0002-1635-4810 description: A structured controlled vocabulary of the anatomy of mosquitoes.