Skip to content

-t/--threads cmd line parsing error #56

Description

@cmatKhan

. I am using v0.5.5, and originally submitted with the following cmd:

ngm \
      -r KN99_genome_fungidb.fasta \
      -q run_1272_s_3_withindex_sequence_AAATGCA.fastq.gz \
      --threads 2 \
      --bam

but, I received this error:

/usr/local/bin/ngm-core: unrecognized option '--threads'

The help text says --threads is a valid argument:

...
General:

 -t/--threads <int>            Number of candidate search threads
...

I resubmitted, replacing --threads with -t and eliminated that error:

  ngm \
     -r KN99_genome_fungidb.fasta \
     -q run_1272_s_3_withindex_sequence_AAATGCA.fastq.gz \
     -t 2 \
     --bam 

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions